Hi to everybody, Maybe I have a silly question but I'm new in this field. An external company has sequenced my RNA samples that corresponds to two different cell lines and they give me back the results data relative to gene expression. For the first cell line they calculate the fold change from FPKM data whereas in the second cell line they use DESeq2. I think that the only way to compare them is starting again the analysis with DESeq2 from the counts ora maybe there is a function in DESeq2 that work with FPKM data.. I don't know how to menage because I don't have the row data.. There is a way to compare those results?
Thank you in advance!
Thank very much Kevin, very useful!!