Entering edit mode
3.8 years ago
manninm
•
0
My lab is looking to merge our go-to Homo_sapiens.GRCh38.86.gtf GTF with lncRNAKB (http://psychiatry.som.jhmi.edu/lncrnakb/download.php) GTF, but we want to drop anything in the lncRNAKB gtf that completely overlaps or differs by < 25 nts from coordinates in the GRch38 GTF. Is there any tool that can do this (hopefully in R) or is this a manual task?
This should help : https://github.com/NBISweden/AGAT