Question: Tool to merge two GTFs
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gravatar for manninm
5 weeks ago by
manninm0
manninm0 wrote:

My lab is looking to merge our go-to Homo_sapiens.GRCh38.86.gtf GTF with lncRNAKB (http://psychiatry.som.jhmi.edu/lncrnakb/download.php) GTF, but we want to drop anything in the lncRNAKB gtf that completely overlaps or differs by < 25 nts from coordinates in the GRch38 GTF. Is there any tool that can do this (hopefully in R) or is this a manual task?

R gtf • 72 views
ADD COMMENTlink written 5 weeks ago by manninm0

This should help : https://github.com/NBISweden/AGAT

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by genomax87k
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