in the NCBI PGAP using-guide, they mentioned that using this pipeline requires three files;
A fasta file. A YAML file containing metadata (usually called submol.yaml). A YAML file that describes the pipeline inputs, including the above two files.
However, I have only the fasta file generated after removing the scaffolds <200 bp.
So where can I find these yaml files !!
Also, after installation on Linux, I tried to run the tool ./pgap.py or pgap.py, but I got this error :
pgap.py: command not found
Any hint !!!