Have two bed files I am intersecting, one of approximately 500 promoters +/- 2kb of TSS and the other some locations of histone marks within those promoters. There are many more intervals in the latter dataset, I would like to get the number of intersects that are unique to the promoter interval file, meaning that even if 25 intervals from the histone mark fall within one promoter I would like it to report 1 intersect. Maybe there is some way of merging across those 25 and making one unified interval that stretches across them. Not really sure of a good way to go about this, thanks.
Question: Intersecting unbalanced BED files, normalizing for one
3 months ago by
LacquerHed • 0
LacquerHed • 0 wrote:
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