Hello, I am a real bioinformatic noob. I have to start a project to make an SNP dataset from scratch. I have ~100 NGS sequencing datasets and a reference genome. My end goal is to create an SNP dataset for conducting genome-wide association mapping.
Can someone please give me a link or reference or tutorial showing a step by step procedure for making an SNP dataset from raw NGS sequence data?
I know it is hard to find a perfect tutorial as there are many. But any suggestions will be much appreciated. I really have no experience in this field and do not know from where to start. Thank you.