Question: About RefSeq Accession Number trasformation
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gravatar for r00628112
4 weeks ago by
r0062811210
r0062811210 wrote:

May anyone gives me some suggestions? I would like to modify a file in transforming the gene_id into protein_id based on this conversion table.

Thank you very much

https://www.dropbox.com/s/9av18k96ic4224b/Gene%20id_Protein%20id.png?dl=0

id gene • 80 views
ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by r0062811210

Can you please elaborate more. What is your input? What do you expect as output? Approximately how many gene IDs are you trying to convert?

ADD REPLYlink written 4 weeks ago by vkkodali2.1k

About 2000 gene id. Because I annotated GO term by using protein fasta file, but the gene_id and protein_id are different. Thus, I can not continue the further analysis.

ADD REPLYlink written 4 weeks ago by r0062811210

So, if I understand correctly, you have two files -- one is a two-column table with gene_id and protein_id and the other is a table with protein_id and go_term columns. You can use the unix command join to join the two files on the protein_id column. I suggest you take a look at some of the examples here.

ADD REPLYlink written 4 weeks ago by vkkodali2.1k
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