Question: How to get nucleotide sequence of the foxp3 enhancer ?
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gravatar for zhuobaowen
3 months ago by
zhuobaowen10
zhuobaowen10 wrote:

Hello everyone, I am doing some research on the regulation of FOXP3 expression, FOXP3 has three enhancers, also known as CNS1, CNS2, CNS3, but I want to get the nucleotide sequence of the FOXP3 enhancer and its location. Does anyone know how to search it and get it? Thank you so much!

rna-seq chip-seq • 150 views
ADD COMMENTlink modified 3 months ago by Alex Nesmelov110 • written 3 months ago by zhuobaowen10

Hi,

Did you check the NCBI database?

António

ADD REPLYlink written 3 months ago by antonioggsousa1.5k

yes, I only get the sequence of transcrips of FOXP3 from NCBI GENE database, but I don't know the location of CNS.

ADD REPLYlink written 3 months ago by zhuobaowen10

For mouse genome the sequences seem to given in the supplement of the paper here (page 20 of the supplement of the paper doi: 10.1038/nature08750 . You can blat the sequences on to mouse genome in the UCSC genome browser to get the genomic location.

ADD REPLYlink written 3 months ago by microfuge1.8k

OK,thank you so much

ADD REPLYlink written 3 months ago by zhuobaowen10
0
gravatar for Alex Nesmelov
3 months ago by
Alex Nesmelov110
Alex Nesmelov110 wrote:

You may try http://slidebase.binf.ku.dk/ and https://fantom.gsc.riken.jp/zenbu/

ADD COMMENTlink written 3 months ago by Alex Nesmelov110
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