Question: How To Convert Gene Names From Agilent Id To Ncbi Ids?
1
gravatar for syed.nuruddin
7.6 years ago by
syed.nuruddin10 wrote:

I have performed microarray expression analysis from the sample of Sheep brains by using Agilent ovine microarray. Now I have Agilent gene ID and gene accession number but it seems that DAVID is not able to recongnize these genes. Can you help me by providing suggestion about how I can translate these genes name to homologue genes (Human /Bovine) names or symbol?

conversion • 7.2k views
ADD COMMENTlink modified 5.1 years ago by Biostar ♦♦ 20 • written 7.6 years ago by syed.nuruddin10

I haven't worked on this problem but I remember coming across a blog answering similar question recently. You should at the least get some pointers. http://gettinggeneticsdone.blogspot.de/2012/03/video-tip-convert-gene-ids-with-biomart.html

ADD REPLYlink written 7.6 years ago by Arun2.3k

Good point, I also thought of that first, but Ensembl doesn't have sheep (Ovis aries) genome.

ADD REPLYlink written 7.6 years ago by Sudeep1.6k
1
gravatar for Neilfws
7.6 years ago by
Neilfws48k
Sydney, Australia
Neilfws48k wrote:

You don't say which platform you are using, but it might be available in GEO. Here, for example, is GPL14112: Agilent-019921 Sheep Gene expression microarray 8x15K. The data table contains official gene symbols and Genbank accession IDs, which should work in DAVID.

ADD COMMENTlink written 7.6 years ago by Neilfws48k
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