Question: Ribo-seq data analysis using an RNA-Seq analysis pipeline
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gravatar for  DataFanatic
10 weeks ago by
DataFanatic260
DataFanatic260 wrote:

Hi, Anyone familiar with Ribo-Seq analysis, Is it possible to apply an RNA-Seq pipeline to Ribo-Seq and TRAP-Seq data? Thanks!

rna-seq trap-seq ribo-seq • 97 views
ADD COMMENTlink modified 10 weeks ago by kristoffer.vittingseerup3.4k • written 10 weeks ago by DataFanatic260
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gravatar for kristoffer.vittingseerup
10 weeks ago by
European Union
kristoffer.vittingseerup3.4k wrote:

I'm not an expert in Ribo-seq but I don't think you can directly use an RNASeq pipeline as there are many QC steps you want to consider when handling Ribo-seq data (codon frequency etc). Have you looked at some ribo-seq pipelines?

ADD COMMENTlink written 10 weeks ago by kristoffer.vittingseerup3.4k
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