What Is The Means By The 2 Percentages For Psi-Cd-Hit Clustering Output?

Question

[nicole]

what is the mean by the 2 percentage values at the end of each line (eg. 70%/100%)?

Cluster 1604

0 523aa, >A.gi|53717949|ref|YP_106935.1... *

1 509aa, >D.gi|134287671|ref|YP_0011098... at 70%/100%

2 511aa, >C.gi|206562297|ref|YP_0022330... at 69%/100%

3 521aa, >B.gi|53724598|ref|YP_104833.1... at 99%/100%

Answer 1

[Joseph Hughes]

The first is the percentage identities, the second is the percentage coverage relative to the representative of the cluster. It's not obvious from the User Guide but you can verify this by looking at the code Line 538.