Question: liftOverPlink Syntax error
gravatar for pwuucl
27 days ago by
pwuucl0 wrote:


Has anyone used liftOverPlink before? I downloaded the script as well as the chain file, then tried the command below, but it always came up the error message:

python --map --out myoutput --chain hg17ToHg18.over.chain.gz
  File "/home/pingwu01/", line 7
    <!DOCTYPE html>
SyntaxError: invalid syntax

Very confused.. Just wonder if anyone has any clue please? Thanks!


snp software error • 85 views
ADD COMMENTlink modified 26 days ago • written 27 days ago by pwuucl0

Hello pwuucl,

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.

Thank you!

ADD REPLYlink written 27 days ago by lieven.sterck8.3k
gravatar for Sam
27 days ago by
New York
Sam3.0k wrote:

From the look of it, your might be a html file. Could you please make sure you have downloaded the file correctly?

Maybe this link will help

ADD COMMENTlink written 27 days ago by Sam3.0k
gravatar for pwuucl
26 days ago by
pwuucl0 wrote:

Many thanks Sam. I was thinking of this as well but struggling to find the right file, your link was very timely! I am using your PRSice2 as well, might ask about the scoring later ... Thanks again

ADD COMMENTlink written 26 days ago by pwuucl0
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