Question: findOverlapofPeaks discrepancy in peaklist vs Venn diagram
gravatar for sayantani.ghoshdastidar
3 months ago by

Why the number of non-overlapping peaks reported in the Venn diagram does not match the non-overlapping peaklists generated by 'findOverlapofPeaks' function in R?

For example:

                                    Peaks reported in Venn             Peaks reported in peaklist
Non-overlapping list A              4973                                                  4582
Non-overlapping list B              4531                                                  3991
chip-seq R • 143 views
ADD COMMENTlink modified 26 days ago by Biostar ♦♦ 20 • written 3 months ago by sayantani.ghoshdastidar0

Please share the code for Venn and findOverlapofPeaks.

ADD REPLYlink written 26 days ago by zx87549.7k

Is it possible that the Venn is reporting the number of overlaps of peaks... meaning a single peak can overlap with multiple other peaks

ADD REPLYlink written 26 days ago by benformatics2.0k
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