Hello, world!
I have a question for HOMER peak calling algorithm. Homer has peak calling tools called 'findPeaks'. It has also CLIP-seq data analysis option called '-style clip'. In webpage, however, there is no information about that. Is there anyone who knows there homer CLIP-seq peak calling algorithms? I tried using this option, yes. It is well adapted all the experiment. I mean that it is well fitted all the experiment. It can be used any other experiment for Input data. For example, IP sample is eCLIP-seq data, but Input sample is GRO-seq or totalRNA-seq data. It is possible. But other tools(CLIPper, PureCLIP, Peakachu, ...) are possible. It can be only same Input experiment. So, I'm really curious about this peak calling algorithm.
Thanks!
Dahun.
