Population-wise decay of linkage disequilibrium (LD)
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18 months ago
sebabiokr ▴ 10

I have three different populations, would like to plot LD with R using plink generated ld files. There is no information on multi-population LD here and so far all reported to plot single LD plot. I'll appreciate any help

R snp next-gen GBS • 553 views
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PopLDdecay:https://github.com/BGI-shenzhen/PopLDdecay

You can set up different subgroups

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