Tool:Pseudotime Abstract KNetL map (PAK map) for single cell data
0
0
Entering edit mode
14 months ago

Pseudotime Abstract KNetL map (PAK map) helps finding the relationships and the true distance between clusters in each condition. In PAK maps each node represents a cluster and the length and the thickness of the links (edges) represent distances between each cluster. The shorter and thicker the link the more related (similar) the cell communities.

PAK map is available through iCellR (v1.5.5) package:

https://github.com/rezakj/iCellR (GitHub)

https://CRAN.R-project.org/package=iCellR (CRAN)

How to run an make PAK maps using iCellR:

pseudotime.knetl(my.obj,interactive = F,cluster.membership = F,conds.to.plot = NULL)

PAK map

Pseudotime scrna graph single cell Tool • 395 views
ADD COMMENT

Login before adding your answer.

Traffic: 2318 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6