Which FireBrowse file type (TCGA RNAseq data) is suitable to be used with DESeq2. When I use 'RSEM_genes' (unnormalized) file I get 'not all values integer' msg.
It should be Illuminahiseq_rnaseqv2-RSEM_genes_normalized. Have a look at here for details of FireBrowse.
Please don't use URL redirectors in answers since they may not be stable. If they become stale then this answer becomes invalid.
Totally agree, so I change it to the actual link. Thanks for the reminder.
You can use the hyperlink icon in edit window to associate the URL with a word (or a set of words) after highlighting them. Like this.
Yeah, that's true, I edited it in the post :)
Thank you. One additional Q, do i need to use Tximport with that file or can use this file directly in DESeqdatasetfrommatrix?