Question

Python script to download fasta files from ncbi

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3.8 years ago

bioinformatics.queries ▴ 70

Hi

Could anyone share the python script to download fasta sequence from NCBI?

sequence • 5.0k views

ADD COMMENT • link updated 3.8 years ago by GenoMax 141k • written 3.8 years ago by bioinformatics.queries ▴ 70

score 0 · Answer 1 · 2020-07-24

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3.8 years ago

GenoMax 141k

Kai Blin's ncbi-genome-download (LINK). If you need whole genomes.
Otherwise: A: download sequences form ncbi using python

You should also look into Entredirect if you have a lot of accession numbers.

ADD COMMENT • link 3.8 years ago by GenoMax 141k

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Thanx Blin for sharing the link

ADD REPLY • link 3.8 years ago by bioinformatics.queries ▴ 70