Question: How Do I Convert Hg19 Gvf To Hg18 Gvf Using Ucsc Liftover Tool
0
gravatar for gupta.ne
8.8 years ago by
gupta.ne0
gupta.ne0 wrote:

Hi,

I am trying to convert GVF files from hg19 to hg18 version using liftover tool. However liftover gives only in GFF/GTF format. But this output is not relevant to me as the further analysis I have to do is on GVF format.Any help would be appreciated. Thanks..

liftover hg19 • 3.1k views
ADD COMMENTlink modified 5 months ago by Biostar ♦♦ 20 • written 8.8 years ago by gupta.ne0
0
gravatar for Istvan Albert
8.8 years ago by
Istvan Albert ♦♦ 86k
University Park, USA
Istvan Albert ♦♦ 86k wrote:

This seems to be a duplicate of:

Liftover Gvf From Hg18 To Hg19

Long story short, there is no alternative to liftover, you have to make do with what you have.

ADD COMMENTlink modified 5 months ago by Ram32k • written 8.8 years ago by Istvan Albert ♦♦ 86k
0
gravatar for deanna.church
8.0 years ago by
deanna.church1.1k
Bethesda, MD
deanna.church1.1k wrote:

There is an alternative for liftover. http://www.ncbi.nlm.nih.gov/genome/tools/remap

Different alignment strategy and additional remapping parameters.

ADD COMMENTlink written 8.0 years ago by deanna.church1.1k
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