Question: Plots for gene expression data
0
gravatar for jsw940
4 months ago by
jsw94010
jsw94010 wrote:

Hello. I have a question about plots which represent RNA-sequencing results.

I have two RNA-sequencing data. One is from gene 'A' knock-down and the other is gene 'B' knock-down. And I found some genes which was up-regulated when 'A' was knocked-down and at the same time down-regulated when 'B' was knocked-down.

So, I want to highlight these genes showing these two knock-down condition.

Is there any good way or plots to use?

Always thank you!

rna-seq R genome • 219 views
ADD COMMENTlink modified 21 days ago by colinsee4470 • written 4 months ago by jsw94010

I guess a heatmap is what you are looking for

ADD REPLYlink written 4 months ago by Nicolas Rosewick9.2k

I agree. I often use ComplexHeatmap package (https://www.bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html). Besides R, you could try TMEV (http://mev.tm4.org/#/welcome).

ADD REPLYlink written 20 days ago by Arsenal20
0
gravatar for colinsee447
21 days ago by
colinsee4470 wrote:

good information for me. I use the website http://essaypapers.reviews/

ADD COMMENTlink modified 21 days ago • written 21 days ago by colinsee4470
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