Question: How to download seqret method in Linux?
0
gravatar for seabed0705
16 days ago by
seabed07050
seabed07050 wrote:

I am a beginner. I got stuck during a Linux exercise. Here

cat AF086833.gb | seqret -filter -feature -osformat gff3> AF086833.gff

So I referenced http://emboss.sourceforge.net/download/.

I followed the instructions on the homepage link above to install seqret,

and there was an error in the compile phase.

The picture shows the directory status and the result of running "make".

The result of "make" is not over by repeating some specific sentences. So the next step does not proceed.

compile sentence : ./configure make

and i success "./configured" but not "make" what can i do...?

the directory status

the result of running "make"

gene • 116 views
ADD COMMENTlink modified 16 days ago • written 16 days ago by seabed07050

What do you mean "blocked"?

ADD REPLYlink written 16 days ago by Joe17k

Please, post your output error!

ADD REPLYlink written 16 days ago by brunobsouzaa230
1
gravatar for Istvan Albert
16 days ago by
Istvan Albert ♦♦ 84k
University Park, USA
Istvan Albert ♦♦ 84k wrote:

Use conda to install the emboss package. seqret is part of the emboss distribution:

Install conda as described in:

https://docs.conda.io/en/latest/miniconda.html

then install emboss from the bioconda channel:

conda install -c bioconda emboss

test the package works:

seqret -h

prints:

Read and write (return) sequences
Version: EMBOSS:6.6.0.0
...
ADD COMMENTlink modified 16 days ago • written 16 days ago by Istvan Albert ♦♦ 84k
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