I'm wondering which options have to plot phylogenetic trees with Python or R.
I know the Phylo for Python and ggtree for R.
There are other interesting libraries to work with it?
I believe ape and phangorn for R both have plotting functionality. For python, the same goes for dendropy and ete3, though all of these packages are more about analysis than plotting. I think matplotlib for python has various tree viz options too.
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