Seurat Violin Plot shows counts LESS than 0?
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2.2 years ago
psm ▴ 100

Hi guys,

When exploring certain genes on Single Cell RNAseq datasets, I've noticed that Seurat violin plots often show gene expression BELOW zero. Is this just a jitter effect? Because I've also noticed that in some cases the cells stack near the zero line too (which would be unexpected of jitter). I uploaded an example here:

gene-for-Bio-Stars

Thanks in advance.

RNA-Seq • 2.2k views
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What is the command line used to plot this violin plot ?

Take a look here : https://github.com/satijalab/seurat/issues/1534

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That post has solved my problem. Thank you - I feel silly for not having found that myself!

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