Question: Extract single transcript sequences from genome assembly
gravatar for kaz0816
7 weeks ago by
kaz08160 wrote:


I want to extract one transcript per gene from the genome assembly and its GFF3 file registered in Refseq. And I want to extract a transcript that has a longest or a certain frame. Anyone know of an efficient method?

I am looking for this method to do ortholog comparisons.

Best regards,

assembly genome • 135 views
ADD COMMENTlink written 7 weeks ago by kaz08160

Python and biopython can help you on that

ADD REPLYlink written 7 weeks ago by Bastien Hervé4.7k
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