Hi,there
I'm new in bioinformatics, and now working with macOS.
According to information given online, the new version of macOS - Catalina - due to the concern of security, the storage has been divided into two partitions, in which one named 'Macintosh HD' is read-only. When I tried to install samtools, found that operation was denies because of its read-only feature.
I'm wondering is there anyway to install samtools in macOS Catalina? by the way, I also tried use homebrew but failed as well. Or is it feasible to shift destination at which I'd like to install those softwares from the protected one into the other, which named 'Macintosh HD - data', and if it is, how?
many thanks in advance.
In this case you have to compile (or install brew) on the partition that is writable.
I set up Conda etc based on the Biostars manual. I did this in April. I have tried several ways to get samtools to work, and it does not work. I have seen that others have this problem, but I have not been able to track the route to a solution. Please help!
errors below:
rerun the installation, not so long ago conda developed a problem where it pulls the wrong version of samtools,
the installation file has been recently updated to fix this error
if that does not work open an issue in the handbook tracker and we'll figure it out there
https://github.com/biostars/biostar-handbook-issues
See this issue as well:
https://github.com/biostars/biostar-handbook-issues/issues/123