Recommendations for software for power analysis of paired sample experiment for RNAseq data
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4.0 years ago
anamaria ▴ 220

Hello,

can you please give me any recommendations for software for power analysis of paired sample experiment for RNAseq data?

All I could find was for non paired.

RNAseq power • 1.1k views
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Hi,

I never tried myself, but I was just checking DESeq2 vignette, and it says that you can perform differential expression analysis on paired samples: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#can-i-use-deseq2-to-analyze-paired-samples

I hope this helps,

António

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HI Antonio,

Thanks for that but DESeq2 does DE analysis. What I need is software which does power analysis of DE paired data done say with DESeq2

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Sorry, I didn't interpret well question.

António

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