Question: Recommendations for software for power analysis of paired sample experiment for RNAseq data
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gravatar for anamaria
11 days ago by
anamaria100
anamaria100 wrote:

Hello,

can you please give me any recommendations for software for power analysis of paired sample experiment for RNAseq data?

All I could find was for non paired.

power rnaseq • 75 views
ADD COMMENTlink written 11 days ago by anamaria100

Hi,

I never tried myself, but I was just checking DESeq2 vignette, and it says that you can perform differential expression analysis on paired samples: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#can-i-use-deseq2-to-analyze-paired-samples

I hope this helps,

António

ADD REPLYlink written 11 days ago by antonioggsousa910

HI Antonio,

Thanks for that but DESeq2 does DE analysis. What I need is software which does power analysis of DE paired data done say with DESeq2

ADD REPLYlink written 11 days ago by anamaria100

Sorry, I didn't interpret well question.

António

ADD REPLYlink written 11 days ago by antonioggsousa910
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