mpileup error : Note: none of --samples-file, --ploidy or --ploidy-file given, assuming all sites are diploid
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3.7 years ago
sami ▴ 40

mpileup return==>Note: none of --samples-file, --ploidy or --ploidy-file given, assuming all sites are diploid

I work on bacteria ,

what should i do in this case ???

thanks

mpileup • 1.9k views
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3.7 years ago
gb ★ 2.2k

With not much more context the answer now is giving --ploidy 1 to your command.

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I work on mycobacterium tuberculosis complex .

thank you . i ll try --ploidy 1

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