problem with fastq dump

Question

[mo.ghasemi717]

Hi every one I'm trying to download a SRA file with this command: fastq-dump -F --split-3 ERR3301300 but it does not work properly and shows: 2020-08-04T05:07:21 fastq-dump.2.9.4 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed )

whats the problem???

Answer 1

[JC]

You have problems connecting to NCBI, better if you use ENA FTP server

• https://www.ebi.ac.uk/ena/data/view/ERR3301300
• ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR330/000/ERR3301300/ERR3301300_1.fastq.gz
• ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR330/000/ERR3301300/ERR3301300_2.fastq.gz

[mo.ghasemi717]

thank you very much .

[mo.ghasemi717]

thank you very much JC