Question: RNA-seq STAR genome mapping
0
gravatar for waaaaaa
6 weeks ago by
waaaaaa0
waaaaaa0 wrote:

I'm working on the genome index file using STAR tool. Following is my code:

STAR --runMode genomeGenerate --genomeDir /GenomeDirectory --genomeFastaFiles D_genome.fasta --sjdbGTFfile D_assembl.gtf

However, it keeps popping out the error message as follow:

star: Bad Option: --runMode.

Usage: star cmd [options] [-find] file1 ... filen [find expression]

I wonder what's wrong with this code, can anyone help? Thanks!

linux rna-seq star • 159 views
ADD COMMENTlink modified 6 weeks ago by Zhilong Jia1.6k • written 6 weeks ago by waaaaaa0
2
gravatar for Zhilong Jia
6 weeks ago by
Zhilong Jia1.6k
London
Zhilong Jia1.6k wrote:

it seems you did not install STAR. what you used probably is star.

ADD COMMENTlink written 6 weeks ago by Zhilong Jia1.6k

Good catch.

ADD REPLYlink written 6 weeks ago by geek_y11k
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