I recently downloaded HMMER to use hmmscan locally in Linux with a Pfam database. It works great, however the ouput files are quite difficult to read quickly in my opinion...
I tried using output options such as: --tblout, --domtblout, --pfamtblout, etc. but the ouput files are still voluminous.
I would like to keep only the top hits in my output files.
I've seen that it was possible with hmmsearch so I was wondering if there was something similar with hmmscan... Ideally, I would want an output as I could find online:
If you have any suggestions, I'll gladly took them. Thank you in advance for your very appreciated help!