Question: Mirna Expression Data Having Agilent Platforms
2
gravatar for Rakhi
8.9 years ago by
Rakhi20
Rakhi20 wrote:

I need to analyse miRNA expression data having agilent platforms. Is there any protocol available for this purpose? which software I should be using? I am a novice in this field. Kindly help me on this...

agilent mirna • 2.4k views
ADD COMMENTlink modified 4.6 years ago by Biostar ♦♦ 20 • written 8.9 years ago by Rakhi20

Please be more specific: exactly what platform are you analyzing? Are you working with raw data or someone else's normalized result set?

ADD REPLYlink written 8.9 years ago by David Quigley11k

Platform ID: GPL7731

Agilent-019118 Human miRNA Microarray 2.0 G4470B (Feature Number version)

We have both raw data as well as normalized data..

ADD REPLYlink written 8.9 years ago by Rakhi20
3
gravatar for Spitshine
8.9 years ago by
Spitshine640
Esch-sur-Alzette, Luxembourg
Spitshine640 wrote:

Did you read the recent report by Lopez-Romero et al. on how to process Agilent's miRNA data with R? They are not very specific about the packages used in the paper but you can trace the authors' contribution to Bioconductor. They will have the best knowledge in the matter in case you run into specific questions.

ADD COMMENTlink written 8.9 years ago by Spitshine640
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