Question: how about 3d-dna
0
gravatar for leeunfeng
10 weeks ago by
leeunfeng0
leeunfeng0 wrote:

how about 3d-dna. Especially for highly heterozygous genomes.and,Juicer Tools how to manually correct,

sequence assembly • 183 views
ADD COMMENTlink modified 4 weeks ago by Juke344.8k • written 10 weeks ago by leeunfeng0

Please edit your question and add more detail. I doubt anyone here can understand what you're referring to.

ADD REPLYlink written 10 weeks ago by RamRS30k

This questions is badly posed but is about valid tools. See this link for help. You don't say if you have Hi-C data.

ADD REPLYlink written 10 weeks ago by genomax91k
1
gravatar for Juke34
4 weeks ago by
Juke344.8k
Sweden
Juke344.8k wrote:

I think ALLHiC will perform better than 3d-dna. See that paper:
Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data
Xingtan Zhang, Shengcheng Zhang, Qian Zhao, Ray Ming & Haibao Tang
Nature Plants volume 5, pages833–845(2019)

I have used it and it really easy to use and to install.

ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by Juke344.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1736 users visited in the last hour