How to interpret the values given in the BisoGenet output table ?
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9 months ago
svp ▴ 440

I used Cytoscape App BisoGenet plugin to generate protein-protein interaction network. The annotation table of provided by BisoGenet contain column ' bg.annotation.ExperimMethods' which explains about the method for interaction evidence. But I am not sure about the values 1, 93, 81, 80 , 47... etc given along with the experiment name.

bg.annotation.ExperimMethods
1-%%-in vitro
93-%%-affinity chromatography technology
1-%%-in vitro|2-%%-in vivo
1-%%-in vitro|250-%%-three-dimensional-structure
81-%%-molecular sieving|1-%%-in vitro|250-%%-three-dimensional-structure
80-%%-x-ray crystallography
47-%%-biochemical|80-%%-x-ray crystallography
38-%%-two hybrid pooling approach|26-%%-pull down|3-%%-two hybrid|17-%%-two hybrid array
1-%%-in vitro|26-%%-pull down|63-%%-isothermal titration calorimetry|2-%%-in vivo|3-%%-two hybrid|17-%%-two hybrid array
2-%%-in vivo
BisoGenet protein interction nework Cytoscape • 202 views
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Entering edit mode
9 months ago
scooter ▴ 450

If I had to guess, those look like identifiers and aren't meaningful in any way as an indication of the evidence (i.e., they are not meant to be a score). I would suggest e-mailing the authors to see if they can provide you with any additional information.

--- scooter

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