Question: Lgrc Dataset
gravatar for dutta.tridib
7.6 years ago by
dutta.tridib0 wrote:

Hello, I am very new to this area/field of study and my background is not biology. But I need to download data from LGRC database which contains data regarding DNA methylation (charm normalized ? a term unknown to me ). The matrix of data I am looking is a matrix whose rows are methylation values of genes and columns are from patients (with COPD, ILD or CLTR).

Is there a tool / script available which will extract these information from LGRC database ? Any help regarding this would be greatly appreciated.


dataset • 1.7k views
ADD COMMENTlink written 7.6 years ago by dutta.tridib0

Does the data portal introduction video help? If that doesn't help, sometimes you can email the db maintainers & ask for more information about their data structure -- it may help you parse it.

Also, CHARM is an R package.

ADD REPLYlink modified 7.6 years ago • written 7.6 years ago by Alex Paciorkowski3.3k
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