Question: Cannot get read.celfiles() method to work?
0
gravatar for DataStoryTeller
5 months ago by
DataStoryTeller10 wrote:

Hello, do y'all have any ideas? read.celfiles() is from the oligo package. Thanks!

library('ff')
library("Biobase")
library('oligo')
...
CELFiles <- list.files(celpath,full.names=TRUE, pattern = "CEL")
RawData <- read.celfiles(CELFiles)

ERROR MESSAGE:

RawData <- read.celfiles(CELFiles) Error in read.celfiles(CELFiles) : could not find function "read.celfiles"

omics micoroarray ff R oligo • 434 views
ADD COMMENTlink modified 5 months ago • written 5 months ago by DataStoryTeller10
1

what version of Oligo are you using?

ADD REPLYlink written 5 months ago by JC12k

'1.52.0', I think the error might trace back to oligoClasses although I still don't know how to fix it. Thanks!

ADD REPLYlink written 5 months ago by DataStoryTeller10

Please shoe the output of sessionInfo(). Also try oligo::read.celfiles(CELFiles)

ADD REPLYlink written 5 months ago by Kevin Blighe69k
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