Question: annotation with Augustus
0
gravatar for Ric
5 weeks ago by
Ric300
Australia
Ric300 wrote:

Hi, we have a plant genome and would like to create an annotation with Augustus. However, I am not sure about the following few parameters.

  • noInFrameStop=false
  • allow_hinted_splicesites=atac
  • genemodel=partial or --genemodel=complete

Which settings are appropriate for a plant genome?

Thank you in advance

annotation augustus genome gene • 124 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by Ric300
1
gravatar for Ric
5 weeks ago by
Ric300
Australia
Ric300 wrote:

Has been answered here

ADD COMMENTlink written 5 weeks ago by Ric300

Thanks for posting the link, Ric.

ADD REPLYlink written 5 weeks ago by Kevin Blighe65k
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