Question: How to get KEGG pathway set with its corresponding metabolite ID/names?
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gravatar for SupBioInformatics
5 months ago by
SupBioInformatics10 wrote:

Hi Guys,

I am learning metabolomic pathway analysis and new to metabolites analysis. If I would like to use KEGG database to map pathway, I wonder how I extract pathways manually? (using R)

For example, I have three metabolites names: c("Acetoacetic acid", "Beta-Alanine", "Creatine") 1. How to find its KEGG ID? And how to get the pathway list with corresponding compound ID/names? 2. Is there a best practice to standardize metabolites names in order to match KEGG compounds?

Thank you.

ADD COMMENTlink modified 5 months ago • written 5 months ago by SupBioInformatics10
1
gravatar for Kevin Blighe
5 months ago by
Kevin Blighe69k
Republic of Ireland
Kevin Blighe69k wrote:

Hi, please see this recent question: pathway analysis for metabolites

Kevin

ADD COMMENTlink written 5 months ago by Kevin Blighe69k
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