Question: online link for SNP genotype frequency calculations
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gravatar for bhavana004
5 weeks ago by
bhavana0040
bhavana0040 wrote:

can someone suggest me online link fro calculating SNP genotype frequencies for case control study?

snp • 126 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by bhavana0040

I think you need more detail in your question? What format is your data in etc

ADD REPLYlink written 5 weeks ago by curious430

I need to calculate chisqaure test, p value, odd ratio, class intervals of genotype frequencies for 2x3 contingency table. Can you suggest some online freely available stats calculator.

ADD REPLYlink written 5 weeks ago by bhavana0040

I would suggest using genetics R package. But if you don't know how to use R, you can use this to calculate chi-square. Take a tour on the website and you will find other calculators!

Also, if you're working with SNPs in a case-control study, don't forget the HWE equilibrium!!!

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by brunobsouzaa260
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