Question: GATK for RNA seq variant calling
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gravatar for danson.wooi
5 weeks ago by
danson.wooi0 wrote:

I am very new to this but I was just wondering what commands do people normally use with HaplotypeCaller for variant calling with GATK on RNA-seq data. I am trying to following the pipeline they have established here https://gatk.broadinstitute.org/hc/en-us/articles/360035531192?id=4067 but wasn't too sure of the best set of commands to use.

snp rna-seq variant calling • 118 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by danson.wooi0
1

Consider: A: Inferring genotype based on RNA sequnces

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by genomax89k
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