Gene Ontology Database
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22 months ago

Hi everyone,

I am trying to build a web application. GO term is almost a standard step in the bioinformatic pipeline and I certainly want to include this in my application. I can easily download the GO term file here called go-basic.obo (very small, ~30 Mb). This is a plain text file, but what I really want is a SQL (MySQL, SQLite..) database. I don't want to build a database from scratch and I am sure there are some high-quality pre-built databases around there. Can anyone suggest a link where I can download the GO term database?

Note: It seems quickGO has API, but I really want the whole database...

Much appreciated.

gene Gene Ontology Database • 822 views
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You can have a look into GO.DB r package.

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Thanks, that's very helpful. I found a prebuilt nice SQLite database in this R library.

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22 months ago
Shalu Jhanwar ▴ 500

Have a look at the gene ontology site that allows downloading of GO database in several formats.