Cellranger cnv analysis bin size
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Entering edit mode
9 months ago
enho ▴ 20

Hi Everyone,

I have recently started to use cellranger pipeline to analyse my sequenced data.

I have started with cellranger-dna mkfastq first to generate fastq files, and then used cellranger-dna cnv to generate BAM files and copy number analysis results.

The problem is that "cellranger-dna cnv" has a default bin size of 20k and there is no argument in available for it to change the bin size.

Anyone knows how can I change the bin size, to say for example 10k?

Thanks

cellranger cellranger_dna cnv singlecell • 253 views
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