How to build a truth set
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Entering edit mode
14 months ago

Hi,

Someone call tell me how to build a SNP truth set for haplotype?

I have 320 individual shallow sequenced already mapped to available genome of a non model tree.

I already performed a test run of one individual using GATK and DeepVariant. Now I want to extend the analysis to the other individuals and compare against a truth set. Problem is I don't have a truth set.

Cheers.

SNP haplotype variant calling • 329 views
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