Similar posts • Search »

• Visualizing Up/Down Regulation Of Genes Based On Fold Change
  Given list of genes and the fold-change value is there a way I can visualize them like this?
• stringDB PPI network with Log fold change?
  I have a set of ~60 differentially expressed genes and their log fold changes. Is there a way for...
• How to calculate "fold changes" in gene expression?
  Hellow I have a question on how to calculate fold changes when analyzing gene expression changes ...
• How to extract fold change data for a list of specified genes using R?
  I am a newbie to R and I am analyzing expression data from an Illumina array. I have imported the...
• % of change and log2 fold change (L2FC)?
  I am trying to understand Gene expression data analysis. Could someone the percentage of change o...
• RNA seq data validation with qPCR: compare log Fold change vs Fold change?
  I sent my RNA seq for analysis to our collaborators, who returned me data in format:  log fold ch...
• Clustering of log-fold change with zeros
  Hi all, I have made a table of log2 fold change ratios from several microarray studies. For gene...
• log2 fold change : how to cut out by two fold?
  So here is a dumb question for someone like me who forgot her high school math. I've seen in pape...
• [solved] Convert fold changes of multiple transcripts of a given gene to a single value characterising this gene
  Hello, After a typical RNA-seq workflow performed by a collaborator I have a table with expressi...
• would it be a good idea to normalize log2 fold changes with loess?
  In the Microarray if the data is not center around 0 on MA-plots, it is normalized with LOESS. Le...
• Is there any established fold-change threshold for miRNA microarray data?
  I am analyzing miRNA microarray data and I would like to establish a fold-change threshold which ...
• RNASeq data RPKM
  Hi I have RNA Seq (RPKM) data. I am trying to look for fold change in the gene expression for s...
• Select top differentially expressed genes based on both p-value and fold-change
  I always selected top differentially expressed genes based on p-values (DESeq2 for differential-e...
• assigning the values in matrix in bash
  I have a matrix consisting of gene name column and log fold change column. I want to change the l...
• Gene expression meta analysis
  Hi, I am analyzing independent RNA-Seq datasets and doing a meta analysis. Is it valid to compar...
• Fold change calculation
  Hello again , I'm still stucked in recalculating values from a series of GEO. This an example fo...
• DEseq/ EdgeR RNaseq calculation of fold change
  I was wondering if it is reasonable to use DEseq/ edgeR packages to call differential expression ...
• Calculating Fold Change from regularized log2- transformed count data, generated by DESeq2 function rlog
  Hello to everyone. I have regularized log2- transformed count data (from bulk RNAseq), generated ...