how to obtain the abundance of superclass pathway of MetaCyc when using humann2 to do function analysis
0
0
Entering edit mode
7 months ago
zhangdengwei ▴ 140

Hi all,

I have employed humann2 to do function analysis, which generated a matrix of the abundance of detailed pathways which begin with "PWY", such as "PWY-5913". And the pathway (PWY-5913) is TCA cycle VI, which is a subclass of TCA cycle.

enter image description here enter image description here I want to get the abundance of the superclass like TCA cycle. Any suggestions would be greatly appreciated!

humann2 MetaCyc pathway • 337 views
ADD COMMENT

Login before adding your answer.

Traffic: 2298 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6