DESeq2 for Differential gene expression

0

Entering edit mode

3.7 years ago

sana777munquad ▴ 10

I have a RNAseq data of RSEM normalized data from UCSC. How can I Import my count data in DESeq2 through tximport. Actually after installing library of tximport, it has itself data and execute how can I import my data.

RNA-Seq • 878 views

ADD COMMENT • link 3.7 years ago by sana777munquad ▴ 10

2

Entering edit mode

Have you read the manual or did any research on available tutorials and posts? This question has been asked many times before.

ADD REPLY • link 3.7 years ago by ATpoint 82k

0

Entering edit mode

Yes I went many tutorials but after library installation I am unable to import my data in this library

ADD REPLY • link 3.7 years ago by sana777munquad ▴ 10

2

Entering edit mode

This statement does not add any information. If you encounter arrors then please show code and error messages since we cannot see your screen. Anecdotal descriptions are impossible to debug. Please do not use the answer field for comments.

ADD REPLY • link 3.7 years ago by ATpoint 82k

0

Entering edit mode

I have count matrix in float format (eg 8.99, 5.98) and prepared metadata also.

ADD REPLY • link 3.7 years ago by sana777munquad ▴ 10

Login before adding your answer.