Question: Are bwa alt contigs controlled purely by idxbase.alt?
gravatar for d-cameron
21 days ago by
d-cameron2.2k wrote:

What is the source of bwa ALT alignment? The documentation indicates that:

bwa reads the ALT contig names from "idxbase.alt"

Does this means that the index itself contains no information about ALT contigs? Would I be able to JIT assign a different set of ALT contigs for different samples without having to rebuild to the index?

bwa • 78 views
ADD COMMENTlink written 21 days ago by d-cameron2.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1886 users visited in the last hour