How to Extract Multiple Sequence from Multi Fasta File by sequence names
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23 months ago

How to Extract Multiple Sequence from Multi Fasta File by sequence name. I have sorted out TE consensus sequences into order and superfamilies according PASTEC outputs, but now I want to build TE libraries for class I and class II TE in order to perform TE annotation step. But now I am confused as to how can I extract those sequences. Please help me

sequence genome • 879 views
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To make it easier to help you, consider adding to your post the first few sequences from your FASTA file, and an example of a sequence name you will use in your query.

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23 months ago
GenoMax 118k

This question has been asked multiple times. Here are two threads with plenty of options:
Extract fasta sequences from a file using a list in another file.
How do I extract Fasta Sequences based on a list of IDs?

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23 months ago
nonaddldy ▴ 10

Maybe you can use TBtools https://github.com/CJ-Chen/TBtools, which is a multifunctional tools for sequence process.

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23 months ago
wljlinksly ▴ 50

hopefully this will work https://github.com/wulj2/fa2fas

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