Question: why the Michigan Imputation Server for chrX imputation quality control fails?
gravatar for dongguiying2017
7 weeks ago by
dongguiying20170 wrote:

There are only non par in my chrX, when I perform genotype imputation by Michigan Imputation Server, the result report quality control fails.

Is there any special steps that I must conduct before imputation?

genotype imputation snp • 142 views
ADD COMMENTlink modified 6 weeks ago • written 7 weeks ago by dongguiying20170

It may be just me, but I feel there's a lot of context missing here. For example, it would be good to know (1) which tool was used, (2) which command, (3) which warning/error message was received, (4) what the expected outcome should look like, (5) what the outcome actually looked like etc.

ADD REPLYlink written 6 weeks ago by Friederike6.3k
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