Hello, this is the first time that I write here, I need help with my data. I have performed an RNA-seq with 2 controls and 2 treats. I have after NOIseq filtering 17554 genes but when I do contrast with Deseq2 and filter out all padj = NA only 5983 genes remain, among this only 8 have a padj < 0.05.
Do you know why I have too many genes with a padj = NA?
Thanks a lot.