Question: Refrence datasets for imputation
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gravatar for melania 2282
8 weeks ago by
melania 228290
melania 228290 wrote:

Hello ! I would like to use two different datasets for genotype imoputation : 1/ 1000G data 2/ Simons foundation project data

I tried to combine both data sets but there are many different reference allels between both data sets. Could you suggest any easy way to combine them ? If not, I am using Impute5 for the imputation and it doesn't accept more than 1 refernce data set , is there any other program accepting 2 data sets other than Impute2 ( bcz it's slow and old ... )

Thank you very much !

snp imputation • 100 views
ADD COMMENTlink written 8 weeks ago by melania 228290

Are they the same build? e.g. both build 37?

ADD REPLYlink written 8 weeks ago by curious450

yes both of them grch 38

ADD REPLYlink written 8 weeks ago by melania 228290
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