Question: Generate a MAP file from a fasta file
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gravatar for ddeliadoreen
12 weeks ago by
ddeliadoreen0 wrote:

Hi to all,

I have a fasta file having SNPs sequences that I extracted from a concatenate of five fragments of different genomic region (I am working on Anopheles funestus mosquito sequences). I would like to get MAP and PED files to plot a Linkage disequilibrium map in Haploview. I have been trying to get those files in PGDSpider and a was able to generate the PED file, while for the MAP file I am getting an error message 'map file cannot be created as there is no loci information'. I just wonder if I did properly filled my fasta file header or if there is any other program that i can use to get these files.

Thanks in advance,

Delia.

snp sequence software error • 115 views
ADD COMMENTlink written 12 weeks ago by ddeliadoreen0
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